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https://github.com/storytold/LiveScan3D.git
synced 2026-10-25 08:19:29 +00:00
Moved to Visual Studio 2015, OpenCV 3.2.0, x64
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@@ -32,7 +32,6 @@
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#define OPENCV_FLANN_KMEANS_INDEX_H_
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#include <algorithm>
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#include <string>
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#include <map>
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#include <cassert>
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#include <limits>
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@@ -211,6 +210,7 @@ public:
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for (int i = 0; i < n; i++) {
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closestDistSq[i] = distance_(dataset_[indices[i]], dataset_[indices[index]], dataset_.cols);
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closestDistSq[i] = ensureSquareDistance<Distance>( closestDistSq[i] );
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currentPot += closestDistSq[i];
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}
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@@ -236,7 +236,10 @@ public:
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// Compute the new potential
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double newPot = 0;
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for (int i = 0; i < n; i++) newPot += std::min( distance_(dataset_[indices[i]], dataset_[indices[index]], dataset_.cols), closestDistSq[i] );
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for (int i = 0; i < n; i++) {
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DistanceType dist = distance_(dataset_[indices[i]], dataset_[indices[index]], dataset_.cols);
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newPot += std::min( ensureSquareDistance<Distance>(dist), closestDistSq[i] );
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}
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// Store the best result
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if ((bestNewPot < 0)||(newPot < bestNewPot)) {
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@@ -248,7 +251,10 @@ public:
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// Add the appropriate center
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centers[centerCount] = indices[bestNewIndex];
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currentPot = bestNewPot;
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for (int i = 0; i < n; i++) closestDistSq[i] = std::min( distance_(dataset_[indices[i]], dataset_[indices[bestNewIndex]], dataset_.cols), closestDistSq[i] );
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for (int i = 0; i < n; i++) {
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DistanceType dist = distance_(dataset_[indices[i]], dataset_[indices[bestNewIndex]], dataset_.cols);
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closestDistSq[i] = std::min( ensureSquareDistance<Distance>(dist), closestDistSq[i] );
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}
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}
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centers_length = centerCount;
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@@ -265,6 +271,71 @@ public:
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return FLANN_INDEX_KMEANS;
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}
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class KMeansDistanceComputer : public cv::ParallelLoopBody
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{
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public:
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KMeansDistanceComputer(Distance _distance, const Matrix<ElementType>& _dataset,
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const int _branching, const int* _indices, const Matrix<double>& _dcenters, const size_t _veclen,
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int* _count, int* _belongs_to, std::vector<DistanceType>& _radiuses, bool& _converged, cv::Mutex& _mtx)
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: distance(_distance)
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, dataset(_dataset)
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, branching(_branching)
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, indices(_indices)
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, dcenters(_dcenters)
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, veclen(_veclen)
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, count(_count)
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, belongs_to(_belongs_to)
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, radiuses(_radiuses)
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, converged(_converged)
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, mtx(_mtx)
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{
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}
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void operator()(const cv::Range& range) const
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{
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const int begin = range.start;
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const int end = range.end;
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for( int i = begin; i<end; ++i)
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{
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DistanceType sq_dist = distance(dataset[indices[i]], dcenters[0], veclen);
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int new_centroid = 0;
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for (int j=1; j<branching; ++j) {
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DistanceType new_sq_dist = distance(dataset[indices[i]], dcenters[j], veclen);
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if (sq_dist>new_sq_dist) {
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new_centroid = j;
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sq_dist = new_sq_dist;
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}
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}
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if (sq_dist > radiuses[new_centroid]) {
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radiuses[new_centroid] = sq_dist;
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}
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if (new_centroid != belongs_to[i]) {
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count[belongs_to[i]]--;
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count[new_centroid]++;
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belongs_to[i] = new_centroid;
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mtx.lock();
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converged = false;
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mtx.unlock();
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}
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}
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}
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private:
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Distance distance;
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const Matrix<ElementType>& dataset;
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const int branching;
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const int* indices;
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const Matrix<double>& dcenters;
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const size_t veclen;
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int* count;
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int* belongs_to;
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std::vector<DistanceType>& radiuses;
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bool& converged;
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cv::Mutex& mtx;
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KMeansDistanceComputer& operator=( const KMeansDistanceComputer & ) { return *this; }
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};
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/**
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* Index constructor
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*
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@@ -370,6 +441,8 @@ public:
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}
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root_ = pool_.allocate<KMeansNode>();
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std::memset(root_, 0, sizeof(KMeansNode));
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computeNodeStatistics(root_, indices_, (int)size_);
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computeClustering(root_, indices_, (int)size_, branching_,0);
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}
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@@ -652,7 +725,8 @@ private:
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return;
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}
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int* centers_idx = new int[branching];
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cv::AutoBuffer<int> centers_idx_buf(branching);
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int* centers_idx = (int*)centers_idx_buf;
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int centers_length;
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(this->*chooseCenters)(branching, indices, indices_length, centers_idx, centers_length);
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@@ -660,29 +734,30 @@ private:
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node->indices = indices;
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std::sort(node->indices,node->indices+indices_length);
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node->childs = NULL;
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delete [] centers_idx;
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return;
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}
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Matrix<double> dcenters(new double[branching*veclen_],branching,veclen_);
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cv::AutoBuffer<double> dcenters_buf(branching*veclen_);
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Matrix<double> dcenters((double*)dcenters_buf,branching,veclen_);
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for (int i=0; i<centers_length; ++i) {
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ElementType* vec = dataset_[centers_idx[i]];
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for (size_t k=0; k<veclen_; ++k) {
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dcenters[i][k] = double(vec[k]);
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}
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}
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delete[] centers_idx;
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std::vector<DistanceType> radiuses(branching);
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int* count = new int[branching];
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cv::AutoBuffer<int> count_buf(branching);
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int* count = (int*)count_buf;
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for (int i=0; i<branching; ++i) {
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radiuses[i] = 0;
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count[i] = 0;
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}
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// assign points to clusters
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int* belongs_to = new int[indices_length];
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cv::AutoBuffer<int> belongs_to_buf(indices_length);
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int* belongs_to = (int*)belongs_to_buf;
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for (int i=0; i<indices_length; ++i) {
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DistanceType sq_dist = distance_(dataset_[indices[i]], dcenters[0], veclen_);
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@@ -726,27 +801,9 @@ private:
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}
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// reassign points to clusters
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for (int i=0; i<indices_length; ++i) {
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DistanceType sq_dist = distance_(dataset_[indices[i]], dcenters[0], veclen_);
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int new_centroid = 0;
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for (int j=1; j<branching; ++j) {
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DistanceType new_sq_dist = distance_(dataset_[indices[i]], dcenters[j], veclen_);
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if (sq_dist>new_sq_dist) {
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new_centroid = j;
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sq_dist = new_sq_dist;
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}
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}
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if (sq_dist>radiuses[new_centroid]) {
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radiuses[new_centroid] = sq_dist;
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}
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if (new_centroid != belongs_to[i]) {
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count[belongs_to[i]]--;
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count[new_centroid]++;
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belongs_to[i] = new_centroid;
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converged = false;
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}
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}
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cv::Mutex mtx;
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KMeansDistanceComputer invoker(distance_, dataset_, branching, indices, dcenters, veclen_, count, belongs_to, radiuses, converged, mtx);
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parallel_for_(cv::Range(0, (int)indices_length), invoker);
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for (int i=0; i<branching; ++i) {
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// if one cluster converges to an empty cluster,
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@@ -759,10 +816,13 @@ private:
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for (int k=0; k<indices_length; ++k) {
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if (belongs_to[k]==j) {
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belongs_to[k] = i;
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count[j]--;
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count[i]++;
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break;
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// for cluster j, we move the furthest element from the center to the empty cluster i
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if ( distance_(dataset_[indices[k]], dcenters[j], veclen_) == radiuses[j] ) {
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belongs_to[k] = i;
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count[j]--;
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count[i]++;
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break;
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}
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}
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}
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converged = false;
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@@ -806,19 +866,16 @@ private:
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variance -= distance_(centers[c], ZeroIterator<ElementType>(), veclen_);
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node->childs[c] = pool_.allocate<KMeansNode>();
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std::memset(node->childs[c], 0, sizeof(KMeansNode));
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node->childs[c]->radius = radiuses[c];
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node->childs[c]->pivot = centers[c];
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node->childs[c]->variance = variance;
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node->childs[c]->mean_radius = mean_radius;
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node->childs[c]->indices = NULL;
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computeClustering(node->childs[c],indices+start, end-start, branching, level+1);
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start=end;
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}
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delete[] dcenters.data;
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delete[] centers;
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delete[] count;
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delete[] belongs_to;
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}
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